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PRDM10 PR/SET domain 10 [ Struthio camelus (African ostrich) ]

Gene ID: 104147659, updated on 23-Aug-2024

Summary

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Gene symbol
PRDM10
Gene description
PR/SET domain 10
Locus tag
N308_10479
See related
Ensembl:ENSSCUG00000012341
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Orthologs
human mouse all
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Genomic context

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See PRDM10 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009271583.1 (870573..906076)

NW_009271583.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 45B-like Neighboring gene amyloid beta precursor like protein 2 Neighboring gene nuclear factor related to kappaB binding protein Neighboring gene transmembrane protein 45B-like Neighboring gene ST14 transmembrane serine protease matriptase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009271583.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009271583.1 Reference ASM69896v1 Primary Assembly

    Range
    870573..906076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009680446.1 → XP_009678741.1  PR domain zinc finger protein 10 isoform X1

    UniProtKB/TrEMBL
    A0A093HX59
    Conserved Domains (5) summary
    COG5048
    Location:592 → 725
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:651 → 671
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:677 → 699
    zf-C2H2; Zinc finger, C2H2 type
    pfam00856
    Location:262 → 367
    SET; SET domain
    pfam16638
    Location:447 → 547
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers

  2. XM_009680448.1 → XP_009678743.1  PR domain zinc finger protein 10 isoform X3

    UniProtKB/TrEMBL
    A0A093HX59
    Conserved Domains (5) summary
    COG5048
    Location:556 → 689
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:615 → 635
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:641 → 663
    zf-C2H2; Zinc finger, C2H2 type
    pfam00856
    Location:222 → 327
    SET; SET domain
    pfam16638
    Location:407 → 507
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers

  3. XM_009680447.1 → XP_009678742.1  PR domain zinc finger protein 10 isoform X2

    UniProtKB/TrEMBL
    A0A093HX59
    Related
    ENSSCUP00000016734.1, ENSSCUT00000022087.1
    Conserved Domains (5) summary
    COG5048
    Location:552 → 685
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:611 → 631
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:637 → 659
    zf-C2H2; Zinc finger, C2H2 type
    pfam00856
    Location:222 → 327
    SET; SET domain
    pfam16638
    Location:407 → 507
    Tristanin_u2; Unstructured region on methyltransferase between zinc-fingers
Nucleotide Protein
Heading Accession and Version

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