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MKRN1 makorin ring finger protein 1 [ Struthio camelus (African ostrich) ]

Gene ID: 104147327, updated on 23-Aug-2024

Summary

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Gene symbol
MKRN1
Gene description
makorin ring finger protein 1
Locus tag
N308_00430
See related
Ensembl:ENSSCUG00000017699
Gene type
protein coding
RefSeq status
MODEL
Organism
Struthio camelus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Struthioniformes; Struthionidae; Struthio
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current ASM69896v1 (GCF_000698965.1) Unplaced Scaffold NW_009271515.1 (6727190..6751816)

NW_009271515.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 2A Neighboring gene pseudouridine-metabolizing bifunctional protein C1861.05-like Neighboring gene RAB19, member RAS oncogene family Neighboring gene solute carrier family 37 member 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009271515.1 Unplaced Scaffold Reference ASM69896v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase makorin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Struthio camelus australis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69896v1 Primary Assembly

Genomic

  1. NW_009271515.1 Reference ASM69896v1 Primary Assembly

    Range
    6727190..6751816
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009679938.1 → XP_009678233.1  E3 ubiquitin-protein ligase makorin-1 isoform X1

    UniProtKB/TrEMBL
    A0A093JZV6
    Related
    ENSSCUP00000024140.1, ENSSCUT00000032052.1
    Conserved Domains (4) summary
    smart00356
    Location:38 → 57
    ZnF_C3H1; zinc finger
    PHA03096
    Location:169 → 318
    PHA03096; p28-like protein; Provisional
    cd00162
    Location:229 → 283
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam15815
    Location:348 → 428
    MKRN1_C; E3 ubiquitin-protein ligase makorin-1, C-terminal

  2. XM_009679939.1 → XP_009678234.1  E3 ubiquitin-protein ligase makorin-1 isoform X2

    UniProtKB/TrEMBL
    A0A093JZV6
    Conserved Domains (4) summary
    smart00356
    Location:25 → 44
    ZnF_C3H1; zinc finger
    PHA03096
    Location:156 → 305
    PHA03096; p28-like protein; Provisional
    cd00162
    Location:216 → 270
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam15815
    Location:335 → 415
    MKRN1_C; E3 ubiquitin-protein ligase makorin-1, C-terminal
Nucleotide Protein
Heading Accession and Version

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