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SPECC1L sperm antigen with calponin homology and coiled-coil domains 1 like [ Egretta garzetta (little egret) ]

Gene ID: 104130091, updated on 3-Aug-2024

Summary

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Gene symbol
SPECC1L
Gene description
sperm antigen with calponin homology and coiled-coil domains 1 like
Locus tag
Z169_10702
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Also known as
Cytospin-A
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009260397.1 (356031..430491)

NW_009260397.1Genomic Context describing neighboring genes Neighboring gene RAB36, member RAS oncogene family Neighboring gene BCR activator of RhoGEF and GTPase Neighboring gene adenosine A2a receptor Neighboring gene beta-ureidopropionase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009260397 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytospin-A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009260397.1 Reference ASM68718v1 Primary Assembly

    Range
    356031..430491
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035898535.1 → XP_035754428.1  cytospin-A isoform X1

    UniProtKB/TrEMBL
    A0A091JEQ8
    Conserved Domains (4) summary
    PHA03247
    Location:830 → 995
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:431 → 804
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd21199
    Location:1008 → 1119
    CH_CYTS; calponin homology (CH) domain found in the cytospin family
    NF038025
    Location:147 → 276
    dapto_LiaX; daptomycin-sensing surface protein LiaX

  2. XM_035898534.1 → XP_035754427.1  cytospin-A isoform X1

    UniProtKB/TrEMBL
    A0A091JEQ8
    Conserved Domains (4) summary
    PHA03247
    Location:830 → 995
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:431 → 804
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd21199
    Location:1008 → 1119
    CH_CYTS; calponin homology (CH) domain found in the cytospin family
    NF038025
    Location:147 → 276
    dapto_LiaX; daptomycin-sensing surface protein LiaX

  3. XM_009643088.2 → XP_009641383.1  cytospin-A isoform X1

    See identical proteins and their annotated locations for XP_009641383.1

    UniProtKB/TrEMBL
    A0A091JEQ8
    Conserved Domains (4) summary
    PHA03247
    Location:830 → 995
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:431 → 804
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd21199
    Location:1008 → 1119
    CH_CYTS; calponin homology (CH) domain found in the cytospin family
    NF038025
    Location:147 → 276
    dapto_LiaX; daptomycin-sensing surface protein LiaX

  4. XM_035898536.1 → XP_035754429.1  cytospin-A isoform X2

    Conserved Domains (4) summary
    PHA03247
    Location:769 → 934
    PHA03247; large tegument protein UL36; Provisional
    COG1196
    Location:370 → 743
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd21199
    Location:947 → 1058
    CH_CYTS; calponin homology (CH) domain found in the cytospin family
    NF038025
    Location:86 → 215
    dapto_LiaX; daptomycin-sensing surface protein LiaX
Nucleotide Protein
Heading Accession and Version

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