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TRIM71 tripartite motif containing 71 [ Egretta garzetta (little egret) ]

Gene ID: 104122961, updated on 3-Aug-2024

Summary

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Gene symbol
TRIM71
Gene description
tripartite motif containing 71
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009259063.1 (2893011..2907748, complement)

NW_009259063.1Genomic Context describing neighboring genes Neighboring gene dynein cytoplasmic 1 light intermediate chain 1 Neighboring gene CCR4-NOT transcription complex subunit 10 Neighboring gene T cell activation inhibitor, mitochondrial Neighboring gene testis and ovary specific TOPAZ 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009259063 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009259063.1 Reference ASM68718v1 Primary Assembly

    Range
    2893011..2907748 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035890702.1 → XP_035746595.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM71

    Conserved Domains (4) summary
    smart00502
    Location:12 → 145
    BBC; B-Box C-terminal domain
    cd14954
    Location:283 → 567
    NHL_TRIM71_like; NHL repeat domain of the tripartite motif-containing protein 71 (TRIM71) and related proteins
    pfam00630
    Location:181 → 276
    Filamin; Filamin/ABP280 repeat
    cl00034
    Location:1 → 20
    Bbox_SF; B-box-type zinc finger superfamily
Nucleotide Protein
Heading Accession and Version

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