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MAP1LC3B microtubule associated protein 1 light chain 3 beta [ Egretta garzetta (little egret) ]

Gene ID: 104121953, updated on 3-Aug-2024

Summary

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Gene symbol
MAP1LC3B
Gene description
microtubule associated protein 1 light chain 3 beta
Locus tag
Z169_10251
Gene type
protein coding
RefSeq status
MODEL
Organism
Egretta garzetta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Ardeidae; Egretta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current ASM68718v1 (GCF_000687185.1) Unplaced Scaffold NW_009258888.1 (169018..183860)

NW_009258888.1Genomic Context describing neighboring genes Neighboring gene KIAA0513 ortholog Neighboring gene F-box protein 31 Neighboring gene zinc finger CCHC-type containing 14 Neighboring gene junctophilin-3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009258888 Unplaced Scaffold Reference ASM68718v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagy of mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
microtubule-associated proteins 1A/1B light chain 3B
Names
Microtubule-associated proteins 1A/1B light chain 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Egretta garzetta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68718v1 Primary Assembly

Genomic

  1. NW_009258888.1 Reference ASM68718v1 Primary Assembly

    Range
    169018..183860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035889654.1 → XP_035745547.1  microtubule-associated proteins 1A/1B light chain 3B

    UniProtKB/TrEMBL
    A0A091IX67
    Conserved Domains (1) summary
    cd16129
    Location:5 → 109
    Ubl_ATG8_MAP1LC3; ubiquitin-like (Ubl) domain found in microtubule associate protein 1 light chain 3 (MAP1LC3)
Nucleotide Protein
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