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VTI1A vesicle transport through interaction with t-SNAREs 1A [ Cuculus canorus (common cuckoo) ]

Gene ID: 104067789, updated on 3-Aug-2024

Summary

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Gene symbol
VTI1A
Gene description
vesicle transport through interaction with t-SNAREs 1A
Locus tag
N303_05183
See related
EnsemblRapid:ENSCCOG00010013322
Gene type
protein coding
RefSeq status
MODEL
Organism
Cuculus canorus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Otidimorphae; Cuculiformes; Cuculidae; Cuculus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_02 current bCucCan1.pri (GCF_017976375.1) 7 NC_071407.1 (5949477..6227331, complement)
100 previous assembly ASM70932v1 (GCF_000709325.1) Unplaced Scaffold NW_009243740.1 (4488315..4769449, complement)

Chromosome 7 - NC_071407.1Genomic Context describing neighboring genes Neighboring gene nebulin related anchoring protein Neighboring gene hyaluronan binding protein 2 Neighboring gene transcription factor 7 like 2 Neighboring gene zinc finger DHHC-type palmitoyltransferase 6 Neighboring gene acyl-CoA synthetase long chain family member 5 Neighboring gene tectorin beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi to vacuole transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle transport through interaction with t-SNAREs homolog 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_017976375.1-RS_2023_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCucCan1.pri

Genomic

  1. NC_071407.1 Reference bCucCan1.pri

    Range
    5949477..6227331 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009570579.2 → XP_009568874.2  vesicle transport through interaction with t-SNAREs homolog 1A isoform X2

    Related
    ENSCCOP00010019178.1, ENSCCOT00010023563.1

  2. XM_054071515.1 → XP_053927490.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X4

    Related
    ENSCCOP00010019143.1, ENSCCOT00010023515.1

  3. XM_009570578.2 → XP_009568873.2  vesicle transport through interaction with t-SNAREs homolog 1A isoform X1

    Related
    ENSCCOP00010019161.1, ENSCCOT00010023540.1

  4. XM_054071514.1 → XP_053927489.1  vesicle transport through interaction with t-SNAREs homolog 1A isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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