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LRP2 LDL receptor related protein 2 [ Pelecanus crispus (Dalmatian pelican) ]

Gene ID: 104032936, updated on 3-Aug-2024

Summary

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Gene symbol
LRP2
Gene description
LDL receptor related protein 2
Locus tag
N334_04502
Gene type
protein coding
RefSeq status
MODEL
Organism
Pelecanus crispus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Pelecanidae; Pelecanus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See LRP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
39
Annotation release Status Assembly Chr Location
100 current ASM68737v1 (GCF_000687375.1) Unplaced Scaffold NW_009093330.1 (4214..54387)

NW_009093330.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009093330.1 Unplaced Scaffold Reference ASM68737v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
low-density lipoprotein receptor-related protein 2
Names
Low-density lipoprotein receptor-related protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pelecanus crispus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68737v1

Genomic

  1. NW_009093330.1 Reference ASM68737v1

    Range
    4214..54387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009485421.1 → XP_009483696.1  low-density lipoprotein receptor-related protein 2

    UniProtKB/TrEMBL
    A0A091SV27
    Conserved Domains (8) summary
    smart00192
    Location:1084 → 1116
    LDLa; Low-density lipoprotein receptor domain class A
    smart00135
    Location:1360 → 1402
    LY; Low-density lipoprotein-receptor YWTD domain
    smart00179
    Location:1249 → 1288
    EGF_CA; Calcium-binding EGF-like domain
    cd00112
    Location:40 → 74
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cd05819
    Location:1965 → 2001
    NHL; NHL repeat [structural motif]
    pfam00058
    Location:2378 → 2418
    Ldl_recept_b; Low-density lipoprotein receptor repeat class B
    pfam14670
    Location:1212 → 1247
    FXa_inhibition; Coagulation Factor Xa inhibitory site
    cl18310
    Location:1964 → 2159
    NHL; NHL repeat unit of beta-propeller proteins
Nucleotide Protein
Heading Accession and Version

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