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ATF7IP activating transcription factor 7 interacting protein [ Nipponia nippon (crested ibis) ]

Gene ID: 104021664, updated on 3-Aug-2024

Summary

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Gene symbol
ATF7IP
Gene description
activating transcription factor 7 interacting protein
Gene type
protein coding
RefSeq status
MODEL
Organism
Nipponia nippon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Pelecaniformes; Threskiornithidae; Nipponia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
100 current ASM70822v1 (GCF_000708225.1) Unplaced Scaffold NW_009057284.1 (4040852..4096131, complement)

NW_009057284.1Genomic Context describing neighboring genes Neighboring gene guanylate cyclase 2C Neighboring gene phospholipase B domain containing 1 Neighboring gene uncharacterized LOC104021665 Neighboring gene glutamate ionotropic receptor NMDA type subunit 2B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_009057284.1 Unplaced Scaffold Reference ASM70822v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA methylation-dependent heterochromatin formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: activating transcription factor 7-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nipponia nippon Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70822v1 Primary Assembly

Genomic

  1. NW_009057284.1 Reference ASM70822v1 Primary Assembly

    Range
    4040852..4096131 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009475262.1 → XP_009473537.1  LOW QUALITY PROTEIN: activating transcription factor 7-interacting protein 1

    Conserved Domains (2) summary
    pfam16788
    Location:392 → 603
    ATF7IP_BD; ATF-interacting protein binding domain
    pfam16794
    Location:994 → 1094
    fn3_4; Fibronectin-III type domain
Nucleotide Protein
Heading Accession and Version

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