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MMP16 matrix metallopeptidase 16 [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103925485, updated on 3-Aug-2024

Summary

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Gene symbol
MMP16
Gene description
matrix metallopeptidase 16
Locus tag
AS28_09228
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008824110.1 (446892..637143)

NW_008824110.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008824110.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in skeletal system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-16
Names
Matrix metalloproteinase-16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008824110.1 Reference ASM69910v1 Primary Assembly

    Range
    446892..637143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009334216.1 → XP_009332491.1  matrix metalloproteinase-16

    See identical proteins and their annotated locations for XP_009332491.1

    UniProtKB/TrEMBL
    A0A093NKD1
    Conserved Domains (5) summary
    PHA03247
    Location:273 → 353
    PHA03247; large tegument protein UL36; Provisional
    cd00094
    Location:342 → 534
    HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
    pfam00413
    Location:126 → 291
    Peptidase_M10; Matrixin
    pfam01471
    Location:46 → 96
    PG_binding_1; Putative peptidoglycan binding domain
    pfam11857
    Location:539 → 609
    DUF3377; Domain of unknown function (DUF3377)
Nucleotide Protein
Heading Accession and Version

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