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CLTCL1 clathrin heavy chain like 1 [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103922594, updated on 3-Aug-2024

Summary

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Gene symbol
CLTCL1
Gene description
clathrin heavy chain like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human all
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Genomic context

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Location:
chromosome: Un
Exon count:
31
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008825429.1 (1328667..1357485)

NW_008825429.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase alpha Neighboring gene serpin family D member 1 Neighboring gene synaptosome associated protein 29 Neighboring gene somatomedin-B and thrombospondin type-1 domain-containing protein-like Neighboring gene solute carrier family 25 member 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008825429.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables clathrin light chain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of clathrin coat of coated pit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin coat of trans-Golgi network vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of clathrin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in clathrin-coated endocytic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: clathrin heavy chain 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008825429.1 Reference ASM69910v1 Primary Assembly

    Range
    1328667..1357485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009330752.1 → XP_009329027.1  LOW QUALITY PROTEIN: clathrin heavy chain 2

    Conserved Domains (5) summary
    smart00299
    Location:1243 → 1385
    CLH; Clathrin heavy chain repeat homology
    pfam00637
    Location:1396 → 1533
    Clathrin; Region in Clathrin and VPS
    pfam01394
    Location:265 → 299
    Clathrin_propel; Clathrin propeller repeat
    pfam09268
    Location:300 → 321
    Clathrin-link; Clathrin, heavy-chain linker
    pfam13838
    Location:333 → 390
    Clathrin_H_link; Clathrin-H-link
Nucleotide Protein
Heading Accession and Version

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