U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL22A1 collagen type XXII alpha 1 chain [ Pygoscelis adeliae (Adelie penguin) ]

Gene ID: 103914318, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
COL22A1
Gene description
collagen type XXII alpha 1 chain
Locus tag
AS28_08234
Gene type
protein coding
RefSeq status
MODEL
Organism
Pygoscelis adeliae
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Pygoscelis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See COL22A1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
63
Annotation release Status Assembly Chr Location
100 current ASM69910v1 (GCF_000699105.1) Unplaced Scaffold NW_008824437.1 (904208..1119770)

NW_008824437.1Genomic Context describing neighboring genes Neighboring gene trafficking protein particle complex subunit 9-like Neighboring gene potassium two pore domain channel subfamily K member 9 Neighboring gene leucine-rich repeat-containing protein 40-like Neighboring gene family with sequence similarity 135 member B

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008824437.1 Unplaced Scaffold Reference ASM69910v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(XXII) chain
Names
Collagen alpha-1(XXII) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Pygoscelis adeliae Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69910v1 Primary Assembly

Genomic

  1. NW_008824437.1 Reference ASM69910v1 Primary Assembly

    Range
    904208..1119770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009320934.1 → XP_009319209.1  collagen alpha-1(XXII) chain

    Conserved Domains (3) summary
    pfam01391
    Location:523 → 581
    Collagen; Collagen triple helix repeat (20 copies)
    cl00057
    Location:36 → 219
    vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    cl22861
    Location:239 → 426
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.