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gzf1 GDNF-inducible zinc finger protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 103908658, updated on 12-Sep-2024

Summary

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Official Symbol
gzf1provided by ZNC
Official Full Name
GDNF-inducible zinc finger protein 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-130731-1
See related
AllianceGenome:ZFIN:ZDB-GENE-130731-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Orthologous to human GZF1 (GDNF inducible zinc finger protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (45620070..45634503)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (45663956..45678404)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene transfer RNA leucine (anticodon UAA) Neighboring gene N-ethylmaleimide-sensitive factor attachment protein, beta b Neighboring gene glycerophosphocholine phosphodiesterase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
GDNF-inducible zinc finger protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    45620070..45634503
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009301441.4 → XP_009299716.1  GDNF-inducible zinc finger protein 1

    UniProtKB/TrEMBL
    A0A8M3AS93
    Conserved Domains (5) summary
    smart00225
    Location:32 → 122
    BTB; Broad-Complex, Tramtrack and Bric a brac
    COG5048
    Location:322 → 549
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:365 → 385
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:23 → 125
    BTB; BTB/POZ domain
    pfam13465
    Location:517 → 541
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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