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RBM17 RNA binding motif protein 17 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103908100, updated on 3-Aug-2024

Summary

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Gene symbol
RBM17
Gene description
RNA binding motif protein 17
Locus tag
AS27_03782
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008794449.1 (1712115..1727119, complement)

NW_008794449.1Genomic Context describing neighboring genes Neighboring gene protein kinase C theta Neighboring gene 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 Neighboring gene interleukin-2 receptor subunit alpha Neighboring gene endonuclease domain-containing 1 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008794449.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 45
Names
Splicing factor 45

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008794449.1 Reference ASM69914v1

    Range
    1712115..1727119 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009290420.2 → XP_009288695.1  splicing factor 45 isoform X2

    See identical proteins and their annotated locations for XP_009288695.1

    Conserved Domains (2) summary
    cd12647
    Location:302 → 396
    RRM_UHM_SPF45; RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
    cl25887
    Location:172 → 397
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  2. XM_009290419.2 → XP_009288694.1  splicing factor 45 isoform X1

    See identical proteins and their annotated locations for XP_009288694.1

    UniProtKB/TrEMBL
    A0A087QMI9
    Conserved Domains (2) summary
    TIGR01645
    Location:173 → 398
    half-pint; poly-U binding splicing factor, half-pint family
    cd12647
    Location:303 → 397
    RRM_UHM_SPF45; RNA recognition motif (RRM) found in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins
Nucleotide Protein
Heading Accession and Version

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