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USP38 ubiquitin specific peptidase 38 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103908034, updated on 3-Aug-2024

Summary

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Gene symbol
USP38
Gene description
ubiquitin specific peptidase 38
Locus tag
AS27_01278
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008794447.1 (4692075..4711143)

NW_008794447.1Genomic Context describing neighboring genes Neighboring gene interleukin 15 Neighboring gene inositol polyphosphate-4-phosphatase type II B Neighboring gene uncharacterized LOC103908032 Neighboring gene GRB2 associated binding protein 1 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008794447.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 38
Names
Ubiquitin carboxyl-terminal hydrolase 38

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008794447.1 Reference ASM69914v1

    Range
    4692075..4711143
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009290321.2 → XP_009288596.1  ubiquitin carboxyl-terminal hydrolase 38 isoform X1

    Conserved Domains (2) summary
    cd02664
    Location:110 → 608
    Peptidase_C19H; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:109 → 607
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_009290322.2 → XP_009288597.1  ubiquitin carboxyl-terminal hydrolase 38 isoform X2

    Conserved Domains (2) summary
    cd02664
    Location:72 → 570
    Peptidase_C19H; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:71 → 569
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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