U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCAF8 SR-related CTD associated factor 8 [ Aptenodytes forsteri (emperor penguin) ]

Gene ID: 103900698, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
SCAF8
Gene description
SR-related CTD associated factor 8
Locus tag
AS27_14762
Gene type
protein coding
RefSeq status
MODEL
Organism
Aptenodytes forsteri
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Aequornithes; Sphenisciformes; Spheniscidae; Aptenodytes
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current ASM69914v1 (GCF_000699145.1) Unplaced Scaffold NW_008795490.1 (4126449..4211493)

NW_008795490.1Genomic Context describing neighboring genes Neighboring gene interaction protein for cytohesin exchange factors 1 Neighboring gene CNKSR family member 3 Neighboring gene TIAM Rac1 associated GEF 2 Neighboring gene transcription factor B1, mitochondrial Neighboring gene claudin 20

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_008795490.1 Unplaced Scaffold Reference ASM69914v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SCAF8
Names
Protein SCAF8

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Aptenodytes forsteri Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69914v1

Genomic

  1. NW_008795490.1 Reference ASM69914v1

    Range
    4126449..4211493
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009281426.2 → XP_009279701.1  protein SCAF8 isoform X1

    See identical proteins and their annotated locations for XP_009279701.1

    UniProtKB/TrEMBL
    A0A087R661
    Conserved Domains (4) summary
    COG0724
    Location:449 → 533
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:1 → 100
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:451 → 529
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam15279
    Location:797 → 1018
    SOBP; Sine oculis-binding protein

  2. XM_009281425.1 → XP_009279700.1  protein SCAF8 isoform X1

    See identical proteins and their annotated locations for XP_009279700.1

    UniProtKB/TrEMBL
    A0A087R661
    Conserved Domains (4) summary
    COG0724
    Location:449 → 533
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:1 → 100
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:451 → 529
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam15279
    Location:797 → 1018
    SOBP; Sine oculis-binding protein

  3. XM_009281427.1 → XP_009279702.1  protein SCAF8 isoform X2

    UniProtKB/TrEMBL
    A0A087R661
    Conserved Domains (4) summary
    COG0724
    Location:448 → 532
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd03562
    Location:1 → 100
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
    cd12462
    Location:450 → 528
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam15279
    Location:796 → 1017
    SOBP; Sine oculis-binding protein

  4. XM_009281428.1 → XP_009279703.1  protein SCAF8 isoform X3

    UniProtKB/TrEMBL
    A0A087R661
    Conserved Domains (2) summary
    cd12462
    Location:212 → 290
    RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
    pfam15279
    Location:558 → 779
    SOBP; Sine oculis-binding protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.