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PDPN podoplanin [ Acanthisitta chloris (rifleman) ]

Gene ID: 103797017, updated on 3-Aug-2024

Summary

Gene symbol
PDPN
Gene description
podoplanin
Locus tag
N310_01815
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthisitta chloris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Acanthisittidae; Acanthisitta
Orthologs
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Genomic context

See PDPN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM69581v1 (GCF_000695815.1) Unplaced Scaffold NW_008658951.1 (41001..58084)

NW_008658951.1Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 38

Genomic regions, transcripts, and products

Genomic Sequence:
NW_008658951.1 Unplaced Scaffold Reference ASM69581v1

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemokine binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables protein-folding chaperone binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables signaling receptor binding IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in basolateral plasma membrane IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in filopodium IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in lamellipodium IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
LOW QUALITY PROTEIN: podoplanin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthisitta chloris Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69581v1

Genomic

  1. NW_008658951.1 Reference ASM69581v1

    Range
    41001..58084
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009069209.1XP_009067457.1  LOW QUALITY PROTEIN: podoplanin

    Conserved Domains (1) summary
    pfam05808
    Location:77223
    Podoplanin; Podoplanin