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Fat2 FAT atypical cadherin 2 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103749073, updated on 11-Mar-2024

Summary

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Gene symbol
Fat2
Gene description
FAT atypical cadherin 2
See related
Ensembl:ENSNGAG00000005998
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008354694.1 (844572..935655)

NW_008354694.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA73 family Neighboring gene U6 spliceosomal RNA Neighboring gene secreted protein acidic and cysteine rich Neighboring gene solute carrier family 36 member 1 Neighboring gene solute carrier family 36 member 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008354694 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin Fat 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008354694.1 Reference S.galili_v1.0 Primary Assembly

    Range
    844572..935655
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008851882.1 → XP_008850104.1  protocadherin Fat 2

    UniProtKB/TrEMBL
    A0A8C6W371
    Related
    ENSNGAP00000004593.1, ENSNGAT00000007528.1
    Conserved Domains (4) summary
    cd11304
    Location:3221 → 3317
    Cadherin_repeat; Cadherin tandem repeat domain
    cd00054
    Location:3885 → 3917
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    pfam00008
    Location:3846 → 3877
    EGF; EGF-like domain
    pfam02210
    Location:3695 → 3813
    Laminin_G_2; Laminin G domain
Nucleotide Protein
Heading Accession and Version

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