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Lingo1 leucine rich repeat and Ig domain containing 1 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103743540, updated on 11-Mar-2024

Summary

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Gene symbol
Lingo1
Gene description
leucine rich repeat and Ig domain containing 1
See related
Ensembl:ENSNGAG00000021247
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008348203.1 (596596..777663)

NW_008348203.1Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S20-like Neighboring gene ciliary microtubule associated protein 1C Neighboring gene high mobility group 20A Neighboring gene nucleosome assembly protein 1-like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008348203 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008348203.1 Reference S.galili_v1.0 Primary Assembly

    Range
    596596..777663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029569221.1 → XP_029425081.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Related
    ENSNGAP00000022336.1, ENSNGAT00000028021.1
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  2. XM_029569223.1 → XP_029425083.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  3. XM_029569218.1 → XP_029425078.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    Conserved Domains (5) summary
    TIGR00864
    Location:354 → 434
    PCC; polycystin cation channel protein
    smart00013
    Location:54 → 88
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:79 → 384
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:86 → 109
    LRR_RI; leucine-rich repeat [structural motif]
    cl11960
    Location:452 → 527
    Ig; Immunoglobulin domain

  4. XM_029569219.1 → XP_029425079.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    Conserved Domains (5) summary
    TIGR00864
    Location:354 → 434
    PCC; polycystin cation channel protein
    smart00013
    Location:54 → 88
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:79 → 384
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:86 → 109
    LRR_RI; leucine-rich repeat [structural motif]
    cl11960
    Location:452 → 527
    Ig; Immunoglobulin domain

  5. XM_029569215.1 → XP_029425075.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    Conserved Domains (5) summary
    TIGR00864
    Location:354 → 434
    PCC; polycystin cation channel protein
    smart00013
    Location:54 → 88
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:79 → 384
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:86 → 109
    LRR_RI; leucine-rich repeat [structural motif]
    cl11960
    Location:452 → 527
    Ig; Immunoglobulin domain

  6. XM_029569216.1 → XP_029425076.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    Conserved Domains (5) summary
    TIGR00864
    Location:354 → 434
    PCC; polycystin cation channel protein
    smart00013
    Location:54 → 88
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:79 → 384
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:86 → 109
    LRR_RI; leucine-rich repeat [structural motif]
    cl11960
    Location:452 → 527
    Ig; Immunoglobulin domain

  7. XM_029569224.1 → XP_029425084.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  8. XM_029569220.1 → XP_029425080.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X1

    Conserved Domains (5) summary
    TIGR00864
    Location:354 → 434
    PCC; polycystin cation channel protein
    smart00013
    Location:54 → 88
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:79 → 384
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:86 → 109
    LRR_RI; leucine-rich repeat [structural motif]
    cl11960
    Location:452 → 527
    Ig; Immunoglobulin domain

  9. XM_008844892.3 → XP_008843114.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    See identical proteins and their annotated locations for XP_008843114.1

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  10. XM_017801058.2 → XP_017656547.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  11. XM_029569222.1 → XP_029425082.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  12. XM_008844893.3 → XP_008843115.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X3

    See identical proteins and their annotated locations for XP_008843115.1

    UniProtKB/TrEMBL
    A0A8C6RTU7
    Conserved Domains (6) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    smart00013
    Location:35 → 69
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:114 → 173
    LRR_8; Leucine rich repeat
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain

  13. XM_008844888.2 → XP_008843110.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C6WBN5
    Related
    ENSNGAP00000022337.1, ENSNGAT00000028022.1
    Conserved Domains (6) summary
    TIGR00864
    Location:341 → 421
    PCC; polycystin cation channel protein
    smart00013
    Location:41 → 75
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:66 → 371
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:73 → 96
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:120 → 179
    LRR_8; Leucine rich repeat
    cl11960
    Location:439 → 514
    Ig; Immunoglobulin domain
Nucleotide Protein
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