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Stx5 syntaxin 5 [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103737661, updated on 11-Mar-2024

Summary

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Gene symbol
Stx5
Gene description
syntaxin 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008341874.1 (478456..499246)

NW_008341874.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 74 Neighboring gene testis-expressed protein 54-like Neighboring gene nuclear RNA export factor 1 Neighboring gene transmembrane protein 223

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008341874 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008341874.1 Reference S.galili_v1.0 Primary Assembly

    Range
    478456..499246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008837494.3 → XP_008835716.1  syntaxin-5 isoform X1

    Conserved Domains (3) summary
    COG5325
    Location:94 → 324
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:266 → 338
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:53 → 74
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  2. XM_008837495.3 → XP_008835717.1  syntaxin-5 isoform X2

    See identical proteins and their annotated locations for XP_008835717.1

    Conserved Domains (3) summary
    COG5325
    Location:40 → 270
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:212 → 284
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 20
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain

  3. XM_008837496.3 → XP_008835718.1  syntaxin-5 isoform X2

    See identical proteins and their annotated locations for XP_008835718.1

    Conserved Domains (3) summary
    COG5325
    Location:40 → 270
    COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
    cd15844
    Location:212 → 284
    SNARE_syntaxin5; SNARE motif of syntaxin 5
    pfam11416
    Location:1 → 20
    Syntaxin-5_N; Syntaxin-5 N-terminal, Sly1p-binding domain
Nucleotide Protein
Heading Accession and Version

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