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Hpca hippocalcin [ Nannospalax galili (Upper Galilee mountains blind mole rat) ]

Gene ID: 103730897, updated on 11-Mar-2024

Summary

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Gene symbol
Hpca
Gene description
hippocalcin
See related
Ensembl:ENSNGAG00000013254
Gene type
protein coding
RefSeq status
MODEL
Organism
Nannospalax galili
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Spalacidae; Spalacinae; Nannospalax
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
102 current S.galili_v1.0 (GCF_000622305.1) Unplaced Scaffold NW_008334092.1 (424541..434282)

NW_008334092.1Genomic Context describing neighboring genes Neighboring gene S100P binding protein Neighboring gene fibronectin type III domain containing 5 Neighboring gene transmembrane protein 54 Neighboring gene ring finger protein 19B Neighboring gene adenylate kinase 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008334092 Unplaced Scaffold Reference S.galili_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing of the blind subterranean mole rat, Spalax galili: utility and potential for the discovery of novel evolutionary patterns. Malik A, et al. PLoS One, 2011. PMID 21857902, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neuron-specific calcium-binding protein hippocalcin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nannospalax galili Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference S.galili_v1.0 Primary Assembly

Genomic

  1. NW_008334092.1 Reference S.galili_v1.0 Primary Assembly

    Range
    424541..434282
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008829203.3 → XP_008827425.1  neuron-specific calcium-binding protein hippocalcin

    See identical proteins and their annotated locations for XP_008827425.1

    UniProtKB/TrEMBL
    A0A8C6R3W4
    Related
    ENSNGAP00000010971.1, ENSNGAT00000016513.1
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

  2. XM_008829202.1 → XP_008827424.1  neuron-specific calcium-binding protein hippocalcin

    See identical proteins and their annotated locations for XP_008827424.1

    UniProtKB/TrEMBL
    A0A8C6R3W4
    Conserved Domains (1) summary
    COG5126
    Location:13 → 179
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
Nucleotide Protein
Heading Accession and Version

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