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PCIF1 phosphorylated CTD interacting factor 1 [ Ursus maritimus (polar bear) ]

Gene ID: 103669856, updated on 11-Mar-2024

Summary

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Gene symbol
PCIF1
Gene description
phosphorylated CTD interacting factor 1
See related
Ensembl:ENSUMAG00000025137
Gene type
protein coding
RefSeq status
MODEL
Organism
Ursus maritimus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ursus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
101 current ASM1731132v1 (GCF_017311325.1) Unplaced Scaffold NW_024424675.1 (33608415..33620141)
100 previous assembly UrsMar_1.0 (GCF_000687225.1) Unplaced Scaffold NW_007907165.1 (6747548..6757295, complement)

NW_024424675.1Genomic Context describing neighboring genes Neighboring gene neuralized E3 ubiquitin protein ligase 2 Neighboring gene cathepsin A Neighboring gene phospholipid transfer protein Neighboring gene zinc finger protein 335 Neighboring gene matrix metallopeptidase 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II C-terminal domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase
Names
PDX1 C-terminal inhibiting factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ursus maritimus Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1731132v1 Primary Assembly

Genomic

  1. NW_024424675.1 Reference ASM1731132v1 Primary Assembly

    Range
    33608415..33620141
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040638403.1 → XP_040494337.1  mRNA (2'-O-methyladenosine-N(6)-)-methyltransferase

    UniProtKB/TrEMBL
    A0A452VMF0, A0A8M1GHV5
    Conserved Domains (2) summary
    cd00201
    Location:47 → 77
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam12237
    Location:446 → 616
    PCIF1_WW; Phosphorylated CTD interacting factor 1 WW domain
Nucleotide Protein
Heading Accession and Version

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