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NFATC1 nuclear factor of activated T cells 1 [ Corvus brachyrhynchos (American crow) ]

Gene ID: 103618702, updated on 3-Aug-2024

Summary

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Gene symbol
NFATC1
Gene description
nuclear factor of activated T cells 1
Locus tag
N302_03219
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus brachyrhynchos
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
101 current ASM69197v1 (GCF_000691975.1) Unplaced Scaffold NW_008238960.1 (1516735..1618445, complement)

NW_008238960.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108447729 Neighboring gene potassium voltage-gated channel modifier subfamily G member 2 Neighboring gene CTD phosphatase subunit 1 Neighboring gene ATPase phospholipid transporting 9B (putative) Neighboring gene spalt like transcription factor 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_008238960.1 Unplaced Scaffold Reference ASM69197v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcineurin-NFAT signaling cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear factor of activated T-cells, cytoplasmic 1
Names
Nuclear factor of activated T-cells, cytoplasmic 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus brachyrhynchos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM69197v1

Genomic

  1. NW_008238960.1 Reference ASM69197v1

    Range
    1516735..1618445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017738637.1 → XP_017594126.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X6

  2. XM_017738634.1 → XP_017594123.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X4

    UniProtKB/TrEMBL
    A0A091EYV3

  3. XM_017738632.1 → XP_017594121.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X2

    UniProtKB/TrEMBL
    A0A091EYV3

  4. XM_008637134.2 → XP_008635356.2  nuclear factor of activated T-cells, cytoplasmic 1 isoform X1

    UniProtKB/TrEMBL
    A0A091EYV3
    Conserved Domains (2) summary
    cd07881
    Location:385 → 559
    RHD-n_NFAT; N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins
    cl15674
    Location:564 → 664
    IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...

  5. XM_017738633.1 → XP_017594122.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X3

    UniProtKB/TrEMBL
    A0A091EYV3

  6. XM_017738636.1 → XP_017594125.1  nuclear factor of activated T-cells, cytoplasmic 1 isoform X5

Nucleotide Protein
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