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SRRM1 serine and arginine repetitive matrix 1 [ Equus przewalskii (Przewalski's horse) ]

Gene ID: 103559277, updated on 11-Mar-2024

Summary

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Gene symbol
SRRM1
Gene description
serine and arginine repetitive matrix 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus przewalskii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Burgud (GCF_000696695.1) Unplaced Scaffold NW_007674839.1 (314918..345373, complement)

NW_007674839.1Genomic Context describing neighboring genes Neighboring gene RUNX family transcription factor 3 Neighboring gene chloride intracellular channel 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007674839 unplaced scaffold reference Burgud Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus przewalskii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Burgud Primary Assembly

Genomic

  1. NW_007674839.1 Reference Burgud Primary Assembly

    Range
    314918..345373 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008532787.1 → XP_008531009.1  serine/arginine repetitive matrix protein 1 isoform X7

    Conserved Domains (4) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl25701
    Location:121 → 209
    RuvB_N; Holliday junction DNA helicase ruvB N-terminus
    cl26464
    Location:380 → 782
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:593 → 791
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  2. XM_008532783.1 → XP_008531005.1  serine/arginine repetitive matrix protein 1 isoform X3

    Conserved Domains (3) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:409 → 811
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:622 → 820
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  3. XM_008532786.1 → XP_008531008.1  serine/arginine repetitive matrix protein 1 isoform X6

    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:604 → 796
    Atrophin-1; Atrophin-1 family

  4. XM_008532784.1 → XP_008531006.1  serine/arginine repetitive matrix protein 1 isoform X4

    Conserved Domains (3) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:380 → 752
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:621 → 819
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  5. XM_008532782.1 → XP_008531004.1  serine/arginine repetitive matrix protein 1 isoform X2

    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:619 → 811
    Atrophin-1; Atrophin-1 family

  6. XM_008532785.1 → XP_008531007.1  serine/arginine repetitive matrix protein 1 isoform X5

    Conserved Domains (2) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:606 → 798
    Atrophin-1; Atrophin-1 family

  7. XM_008532781.1 → XP_008531003.1  serine/arginine repetitive matrix protein 1 isoform X1

    Conserved Domains (3) summary
    pfam01480
    Location:46 → 115
    PWI; PWI domain
    cl26464
    Location:410 → 812
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:623 → 821
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region

  8. XM_008532789.1 → XP_008531011.1  serine/arginine repetitive matrix protein 1 isoform X8

    See identical proteins and their annotated locations for XP_008531011.1

    Conserved Domains (3) summary
    pfam01480
    Location:1 → 32
    PWI; PWI domain
    cl26464
    Location:327 → 729
    Atrophin-1; Atrophin-1 family
    cl28033
    Location:540 → 738
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
Nucleotide Protein
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