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FOXO4 forkhead box O4 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103535658, updated on 3-Aug-2024

Summary

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Gene symbol
FOXO4
Gene description
forkhead box O4
See related
EnsemblRapid:ENSCAAG00010010260
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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See FOXO4 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 4 NC_044247.1 (3959790..3985886, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621745.1 (1265393..1279332)

Chromosome 4 - NC_044247.1Genomic Context describing neighboring genes Neighboring gene sestrin-3 Neighboring gene interleukin 2 receptor subunit gamma Neighboring gene sorting nexin 12 Neighboring gene solute carrier family 7 member 3 Neighboring gene nuclear cap-binding protein subunit 2 Neighboring gene testis expressed 11 Neighboring gene discs large MAGUK scaffold protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
forkhead box protein O4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044247.1 Reference bCalAnn1_v1.p

    Range
    3959790..3985886 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030448992.1 → XP_030304852.1  forkhead box protein O4 isoform X2

    Conserved Domains (4) summary
    COG5025
    Location:41 → 274
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    pfam16675
    Location:255 → 299
    FOXO_KIX_bdg; KIX-binding domain of forkhead box O, CR2
    pfam16676
    Location:388 → 427
    FOXO-TAD; Transactivation domain of FOXO protein family
    cl00061
    Location:41 → 70
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...

  2. XM_030448991.1 → XP_030304851.1  forkhead box protein O4 isoform X1

    Related
    ENSCAAP00010014177.1, ENSCAAT00010014986.1
    Conserved Domains (4) summary
    COG5025
    Location:47 → 364
    COG5025; Transcription factor of the Forkhead/HNF3 family [Transcription]
    cd00059
    Location:80 → 160
    FH; Forkhead (FH), also known as a "winged helix". FH is named for the Drosophila fork head protein, a transcription factor which promotes terminal rather than segmental development. This family of transcription factor domains, which bind to B-DNA as ...
    pfam16675
    Location:345 → 389
    FOXO_KIX_bdg; KIX-binding domain of forkhead box O, CR2
    pfam16676
    Location:478 → 517
    FOXO-TAD; Transactivation domain of FOXO protein family
Nucleotide Protein
Heading Accession and Version

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