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EDC3 enhancer of mRNA decapping 3 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103533822, updated on 3-Aug-2024

Summary

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Gene symbol
EDC3
Gene description
enhancer of mRNA decapping 3
Locus tag
N300_14349
See related
EnsemblRapid:ENSCAAG00010013107
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 10
Exon count:
7
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 10 NC_044256.1 (2982180..3008935, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007621356.1 (170993..192005)

Chromosome 10 - NC_044256.1Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 3B Neighboring gene CDC like kinase 3 Neighboring gene cytochrome P450 1A4 Neighboring gene cytochrome P450 1A5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
enhancer of mRNA-decapping protein 3
Names
Enhancer of mRNA-decapping protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044256.1 Reference bCalAnn1_v1.p

    Range
    2982180..3008935 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030457204.1 → XP_030313064.1  enhancer of mRNA-decapping protein 3

    UniProtKB/TrEMBL
    A0A091IB14
    Related
    ENSCAAP00010018154.1, ENSCAAT00010019276.1
    Conserved Domains (4) summary
    cd01737
    Location:2 → 66
    LSm16_N; Like-Sm protein 16, N-terminal domain
    pfam03853
    Location:304 → 457
    YjeF_N; YjeF-related protein N-terminus
    pfam09532
    Location:201 → 302
    FDF; FDF domain
    pfam16598
    Location:106 → 199
    Edc3_linker; Linker region of enhancer of mRNA-decapping protein 3
Nucleotide Protein
Heading Accession and Version

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