Conserved Protein Domain Family
Edc3_linker
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pfam16598: Edc3_linker (this model, PSSM-Id:374658 is obsolete and has been replaced by 465188)
Linker region of enhancer of mRNA-decapping protein 3
This region is located between the LSM14 pfam12701 (Lsm) and FDF pfam09532 domains of the enhancer of mRNA-decapping protein 3. This region is predicted to be natively unstructured. Its precise functional role is not known.
Links
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Statistics
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PSSM-Id: 374658
Aligned: 7 rows
Threshold Bit Score: 113.408
Created: 25-Apr-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
XP_005602979 102 KLVKKPASSSSAPQNIPKRTDVKSQDVA-------VSPqqQQCSKSYVDRH-MESLSQSRSFRRRHNSWSSSSRHPNQAT 173 horse
2_pfamImport   1 NATNESSRSSTTQITILRRASVPRHTSVpwemvkiTLPrfTCSYDSLRNKA-QDAIKPSRSYCKKTQTGSSNSRGATHST 79 
XP_005994153 108 KGLKKPNISGSAAQPIPRRAELKIQEMI-------TLP--QQYSKSYVDRHtLDSINQSKAFRRRHNSWSSSSRYPNQAT 178 coelacanth
4_pfamImport   1 HAITNSSGSISNPRRVVQRYTTPSQTVTl-----gMHP--LYTSKTSPGSH-IVKMLQSTVHIFPHERGSSNSRGTTQST 72 
XP_004069607  75 nTQTTSAKVSRTPVAVPK-GDARGAEKV-------NSP--QHYSKSFGERQ-LDALGQPKGFRRRHNSWSSSSRGANQMT 143 Japanese medaka
CAG08737      74 NSTSASAYVGSAPVAVPK-GDPRPMENV-------NSP--QHCSKSYGDRH-LDVPGQPKGFRRRHNSWSSSSRGANQAT 142 spotted green p...
KFP55127     101 KVLKKP-ISSSAPQNIPRRTDMKNQDII-------ISPq-QQCSKSYMDRH-VETLTQSKGFRRRHNSwSSSSRHPNQVT 170 turkey vulture

XP_005602979 174 PKKSGLKN----GQMKSKDDECFGDDIE 197 horse
2_pfamImport  80 QRRSGVRNgfagGSVRSKDDECFGEGTD 107
XP_005994153 179 PKKNGVKN----GPMKNKDDECFGEDID 202 coelacanth
4_pfamImport  73 PRRSNVRNggagGQ-RSKNDECFGDGTD 99 
XP_004069607 144 PKKNGVKN----SQMRQRDDECFGDGVD 167 Japanese medaka
CAG08737     143 PKKNGVKN----GQMKHRDDECFGDGMD 166 spotted green pufferfish
KFP55127     171 PKKSGLKN----GQMKSKDDECFGDDID 194 turkey vulture
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