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SHH sonic hedgehog signaling molecule [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103530121, updated on 3-Aug-2024

Summary

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Gene symbol
SHH
Gene description
sonic hedgehog signaling molecule
See related
EnsemblRapid:ENSCAAG00010009769
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 2 NC_044245.1 (9145431..9155352, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007620269.1 (1590500..1600115)

Chromosome 2 - NC_044245.1Genomic Context describing neighboring genes Neighboring gene engrailed homeobox 2 Neighboring gene RNA binding motif protein 33 Neighboring gene ring finger protein 32 Neighboring gene limb development membrane protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables patched binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligodendrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoprocessing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sonic hedgehog protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044245.1 Reference bCalAnn1_v1.p

    Range
    9145431..9155352 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008495662.2 → XP_008493884.2  sonic hedgehog protein

    Related
    ENSCAAP00010013434.1, ENSCAAT00010014228.1
    Conserved Domains (2) summary
    pfam01079
    Location:190 → 411
    Hint; Hint module
    pfam01085
    Location:27 → 187
    HH_signal; Hedgehog amino-terminal signalling domain
Nucleotide Protein
Heading Accession and Version

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