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POLR1F RNA polymerase I subunit F [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103528880, updated on 3-Aug-2024

Summary

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Gene symbol
POLR1F
Gene description
RNA polymerase I subunit F
Locus tag
N300_01032
See related
EnsemblRapid:ENSCAAG00010011402
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
Also known as
TWISTNB
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 2 NC_044245.1 (31021774..31025184, complement)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007620071.1 (9840494..9844697, complement)

Chromosome 2 - NC_044245.1Genomic Context describing neighboring genes Neighboring gene twist family bHLH transcription factor 1 Neighboring gene Fer3 like bHLH transcription factor Neighboring gene transmembrane protein 196 Neighboring gene MET transcriptional regulator MACC1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase I subunit RPA43
Names
TWIST neighbor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044245.1 Reference bCalAnn1_v1.p

    Range
    31021774..31025184 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030445351.1 → XP_030301211.1  DNA-directed RNA polymerase I subunit RPA43 isoform X2

    UniProtKB/TrEMBL
    A0A091I138
    Conserved Domains (2) summary
    cd04328
    Location:26 → 100
    RNAP_I_Rpa43_N; Rpa43, N-terminal ribonucleoprotein (RNP) domain. Rpa43 is a subunit of eukaryotic RNA polymerase (RNAP) I that is homologous to Rpb7 of eukaryotic RNAP II, Rpc25 of eukaryotic RNP III, and RpoE of archaeal RNAP. Rpa43 has two domains, an N-terminal RNP ...
    pfam17875
    Location:98 → 160
    RPA43_OB; RPA43 OB domain in RNA Pol I

  2. XM_030445350.1 → XP_030301210.1  DNA-directed RNA polymerase I subunit RPA43 isoform X1

    Related
    ENSCAAP00010015787.1, ENSCAAT00010016700.1
    Conserved Domains (2) summary
    cd04328
    Location:32 → 115
    RNAP_I_Rpa43_N; Rpa43, N-terminal ribonucleoprotein (RNP) domain. Rpa43 is a subunit of eukaryotic RNA polymerase (RNAP) I that is homologous to Rpb7 of eukaryotic RNAP II, Rpc25 of eukaryotic RNP III, and RpoE of archaeal RNAP. Rpa43 has two domains, an N-terminal RNP ...
    pfam17875
    Location:113 → 175
    RPA43_OB; RPA43 OB domain in RNA Pol I
Nucleotide Protein
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