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TRPC1 transient receptor potential cation channel subfamily C member 1 [ Calypte anna (Anna's hummingbird) ]

Gene ID: 103526058, updated on 3-Aug-2024

Summary

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Gene symbol
TRPC1
Gene description
transient receptor potential cation channel subfamily C member 1
Locus tag
N300_01930
See related
EnsemblRapid:ENSCAAG00010000454
Gene type
protein coding
RefSeq status
MODEL
Organism
Calypte anna
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Strisores; Apodiformes; Trochilidae; Calypte
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
13
Annotation release Status Assembly Chr Location
101 current bCalAnn1_v1.p (GCF_003957555.1) 9 NC_044255.1 (10839072..10857329)
100 previous assembly ASM69908v1 (GCF_000699085.1) Unplaced Scaffold NW_007619439.1 (3124312..3141323)

Chromosome 9 - NC_044255.1Genomic Context describing neighboring genes Neighboring gene ATR serine/threonine kinase Neighboring gene plastin 1 Neighboring gene procollagen C-endopeptidase enhancer 2 Neighboring gene progestin and adipoQ receptor family member 9 Neighboring gene U2 snRNP associated SURP domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables inositol 1,4,5 trisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables store-operated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in manganese ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cation channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
short transient receptor potential channel 1
Names
Short transient receptor potential channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Calypte anna Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bCalAnn1_v1.p

Genomic

  1. NC_044255.1 Reference bCalAnn1_v1.p

    Range
    10839072..10857329
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030456091.1 → XP_030311951.1  short transient receptor potential channel 1 isoform X1

    UniProtKB/TrEMBL
    A0A091IGA4
    Conserved Domains (2) summary
    TIGR00870
    Location:36 → 762
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:71 → 98
    ANK; ANK repeat [structural motif]

  2. XM_030456092.1 → XP_030311952.1  short transient receptor potential channel 1 isoform X2

    UniProtKB/TrEMBL
    A0A091IGA4
    Conserved Domains (2) summary
    TIGR00870
    Location:36 → 727
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:71 → 98
    ANK; ANK repeat [structural motif]

  3. XM_030456093.1 → XP_030311953.1  short transient receptor potential channel 1 isoform X3

    UniProtKB/TrEMBL
    A0A091IGA4
    Related
    ENSCAAP00010000625.1, ENSCAAT00010000631.1
    Conserved Domains (2) summary
    TIGR00870
    Location:36 → 643
    trp; transient-receptor-potential calcium channel protein
    sd00045
    Location:71 → 98
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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