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ctnnal1 catenin (cadherin-associated protein), alpha-like 1 [ Poecilia reticulata (guppy) ]

Gene ID: 103472288, updated on 11-Mar-2024

Summary

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Gene symbol
ctnnal1
Gene description
catenin (cadherin-associated protein), alpha-like 1
See related
Ensembl:ENSPREG00000004309
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia reticulata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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See ctnnal1 in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
19
Annotation release Status Assembly LG Location
101 current Guppy_female_1.0+MT (GCF_000633615.1) LG11 NC_024341.1 (12166297..12222998, complement)

Linkage Group LG11 - NC_024341.1Genomic Context describing neighboring genes Neighboring gene Src like adaptor 1a Neighboring gene actin binding transcription modulator Neighboring gene elongator acetyltransferase complex subunit 2 Neighboring gene gamma-aminobutyric acid (GABA) B receptor, 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024341.1 Chromosome LG11 Reference Guppy_female_1.0+MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Rho protein signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-catulin
Names
catenin alpha like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia reticulata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Guppy_female_1.0+MT Primary Assembly

Genomic

  1. NC_024341.1 Reference Guppy_female_1.0+MT Primary Assembly

    Range
    12166297..12222998 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008421805.2 → XP_008420027.1  alpha-catulin isoform X2

    UniProtKB/TrEMBL
    A0A3P9N9L4, A0A3P9N9P2
    Related
    ENSPREP00000006244.1, ENSPRET00000006330.1
    Conserved Domains (1) summary
    pfam01044
    Location:77 → 510
    Vinculin; Vinculin family

  2. XM_008421804.2 → XP_008420026.1  alpha-catulin isoform X1

    UniProtKB/TrEMBL
    A0A3P9N9P2
    Conserved Domains (1) summary
    pfam01044
    Location:77 → 511
    Vinculin; Vinculin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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