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usp47 ubiquitin specific peptidase 47 [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103398413, updated on 11-Mar-2024

Summary

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Gene symbol
usp47
Gene description
ubiquitin specific peptidase 47
See related
Ensembl:ENSCSEG00000019546
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) Unplaced Scaffold NW_007585110.1 (386916..401272, complement)

NW_007585110.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103398411 Neighboring gene microtubule associated monooxygenase, calponin and LIM domain containing 2a Neighboring gene dickkopf WNT signaling pathway inhibitor 3a Neighboring gene C-type lectin domain family 3, member A Neighboring gene vesicle amine transport 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007585110 Unplaced Scaffold Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 47

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NW_007585110.1 Reference Cse_v1.0 Primary Assembly

    Range
    386916..401272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008337017.3 → XP_008335239.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X1

    UniProtKB/TrEMBL
    A0A3P8WVH9
    Related
    ENSCSEP00000030532.1, ENSCSET00000030937.1
    Conserved Domains (2) summary
    cd02659
    Location:171 → 548
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:172 → 543
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_008337019.3 → XP_008335241.1  ubiquitin carboxyl-terminal hydrolase 47 isoform X2

    Conserved Domains (2) summary
    cd02659
    Location:161 → 538
    peptidase_C19C; A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:162 → 533
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein
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