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bcor BCL6 corepressor [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103391943, updated on 11-Mar-2024

Summary

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Gene symbol
bcor
Gene description
BCL6 corepressor
See related
Ensembl:ENSCSEG00000008344
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 16
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 16 NC_024322.1 (8425791..8502633)

Chromosome 16 - NC_024322.1Genomic Context describing neighboring genes Neighboring gene cyclic AMP receptor-like protein A Neighboring gene MID1 interacting protein 1b Neighboring gene uncharacterized LOC103391951 Neighboring gene ATPase H+ transporting accessory protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024322.1 Chromosome 16 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription corepressor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
BCL-6 corepressor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024322.1 Reference Cse_v1.0 Primary Assembly

    Range
    8425791..8502633
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008328432.3 → XP_008326654.1  BCL-6 corepressor isoform X1

    See identical proteins and their annotated locations for XP_008326654.1

    UniProtKB/TrEMBL
    A0A3P8VI18, A0A3P8VKF0
    Conserved Domains (5) summary
    cd00204
    Location:1513 → 1620
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:1523 → 1614
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1320 → 1460
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    pfam16553
    Location:1690 → 1799
    PUFD; BCORL-PCGF1-binding domain
    sd00045
    Location:1519 → 1550
    ANK; ANK repeat [structural motif]

  2. XM_008328434.3 → XP_008326656.1  BCL-6 corepressor isoform X2

    UniProtKB/TrEMBL
    A0A3P8VI18, A0A3P8VKG9
    Related
    ENSCSEP00000012930.1, ENSCSET00000013085.1
    Conserved Domains (5) summary
    cd00204
    Location:1494 → 1601
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:1504 → 1595
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1301 → 1441
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    pfam16553
    Location:1671 → 1780
    PUFD; BCORL-PCGF1-binding domain
    sd00045
    Location:1500 → 1531
    ANK; ANK repeat [structural motif]

  3. XM_008328433.3 → XP_008326655.1  BCL-6 corepressor isoform X1

    See identical proteins and their annotated locations for XP_008326655.1

    UniProtKB/TrEMBL
    A0A3P8VI18, A0A3P8VKF0
    Related
    ENSCSEP00000012915.1, ENSCSET00000013071.1
    Conserved Domains (5) summary
    cd00204
    Location:1513 → 1620
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam12796
    Location:1523 → 1614
    Ank_2; Ankyrin repeats (3 copies)
    pfam15808
    Location:1320 → 1460
    BCOR; BCL-6 co-repressor, non-ankyrin-repeat region
    pfam16553
    Location:1690 → 1799
    PUFD; BCORL-PCGF1-binding domain
    sd00045
    Location:1519 → 1550
    ANK; ANK repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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