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rims2a regulating synaptic membrane exocytosis 2a [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103388919, updated on 11-Mar-2024

Summary

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Gene symbol
rims2a
Gene description
regulating synaptic membrane exocytosis 2a
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Also known as
rims2
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 13
Exon count:
29
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 13 NC_024319.1 (19839243..19939732)

Chromosome 13 - NC_024319.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 32 Neighboring gene ddb1 and cul4 associated factor 13 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene dendrocyte expressed seven transmembrane protein Neighboring gene dihydropyrimidinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024319.1 Chromosome 13 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables small GTPase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane transporter binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion-regulated exocytosis of neurotransmitter IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of synaptic plasticity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoskeleton of presynaptic active zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 2
Names
regulating synaptic membrane exocytosis 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024319.1 Reference Cse_v1.0 Primary Assembly

    Range
    19839243..19939732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025061919.1 → XP_024917687.1  LOW QUALITY PROTEIN: regulating synaptic membrane exocytosis protein 2

    Conserved Domains (6) summary
    cd04028
    Location:1415 → 1560
    C2B_RIM1alpha; C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins
    cd04031
    Location:855 → 978
    C2A_RIM1alpha; C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins
    cd00992
    Location:702 → 783
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam15242
    Location:1090 → 1166
    FAM53; Family of FAM53
    cl22851
    Location:52 → 216
    PHD_SF; PHD finger superfamily
    cl28890
    Location:171 → 223
    FYVE_like_SF; FYVE domain like superfamily
Nucleotide Protein
Heading Accession and Version

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