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syf2 SYF2 pre-mRNA-splicing factor [ Cynoglossus semilaevis (tongue sole) ]

Gene ID: 103382054, updated on 11-Mar-2024

Summary

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Gene symbol
syf2
Gene description
SYF2 pre-mRNA-splicing factor
See related
Ensembl:ENSCSEG00000000117
Gene type
protein coding
RefSeq status
MODEL
Organism
Cynoglossus semilaevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Cynoglossidae; Cynoglossinae; Cynoglossus
Orthologs
human zebrafish all
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Genomic context

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See syf2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Cse_v1.0 (GCF_000523025.1) 1 NC_024307.1 (2253977..2259695, complement)

Chromosome 1 - NC_024307.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 50A Neighboring gene Rh blood group, D antigen Neighboring gene arginine/serine-rich protein 1 Neighboring gene uncharacterized LOC112487580 Neighboring gene RUNX family transcription factor 3 Neighboring gene uncharacterized LOC112487582

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_024307.1 Chromosome 1 Reference Cse_v1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SYF2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cynoglossus semilaevis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cse_v1.0 Primary Assembly

Genomic

  1. NC_024307.1 Reference Cse_v1.0 Primary Assembly

    Range
    2253977..2259695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008314742.2 → XP_008312964.1  pre-mRNA-splicing factor SYF2

    UniProtKB/TrEMBL
    A0A3P8UHN4
    Related
    ENSCSEP00000000126.1, ENSCSET00000000150.1
    Conserved Domains (1) summary
    pfam08231
    Location:85 → 233
    SYF2; SYF2 splicing factor
Nucleotide Protein
Heading Accession and Version

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