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gpatch3 G patch domain containing 3 [ Stegastes partitus (bicolor damselfish) ]

Gene ID: 103366406, updated on 11-Mar-2024

Summary

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Gene symbol
gpatch3
Gene description
G patch domain containing 3
See related
Ensembl:ENSSPAG00000013046
Gene type
protein coding
RefSeq status
MODEL
Organism
Stegastes partitus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Pomacentridae; Stegastes
Orthologs
human zebrafish all
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Genomic context

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See gpatch3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Stegastes_partitus-1.0.2 (GCF_000690725.1) Unplaced Scaffold NW_007578675.1 (130086..134747, complement)

NW_007578675.1Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 1Aa Neighboring gene GPN-loop GTPase 2 Neighboring gene nuclear receptor subfamily 0, group B, member 2a Neighboring gene keratinocyte differentiation factor 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007578675 unplaced scaffold reference Stegastes_partitus-1.0.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of RIG-I signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of type I interferon production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
G patch domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Stegastes partitus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Stegastes_partitus-1.0.2

Genomic

  1. NW_007578675.1 Reference Stegastes_partitus-1.0.2

    Range
    130086..134747 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008294123.1 → XP_008292345.1  G patch domain-containing protein 3

    UniProtKB/TrEMBL
    A0A3B5AUV2
    Related
    ENSSPAP00000017297.1, ENSSPAT00000017565.1
    Conserved Domains (2) summary
    smart00443
    Location:412 → 458
    G_patch; glycine rich nucleic binding domain
    cl17169
    Location:12 → 33
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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