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SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein [ Carlito syrichta (Philippine tarsier) ]

Gene ID: 103276317, updated on 11-Mar-2024

Summary

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Gene symbol
SYNCRIP
Gene description
synaptotagmin binding cytoplasmic RNA interacting protein
See related
Ensembl:ENSTSYG00000013305
Gene type
protein coding
RefSeq status
MODEL
Organism
Carlito syrichta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Tarsius_syrichta-2.0.1 (GCF_000164805.1) Unplaced Scaffold NW_007260132.1 (771600..806029, complement)

NW_007260132.1Genomic Context describing neighboring genes Neighboring gene 5'-nucleotidase ecto Neighboring gene sorting nexin 14

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_007260132 Unplaced Scaffold Reference Tarsius_syrichta-2.0.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA 5'-UTR binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CRD-mediated mRNA stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CRD-mediated mRNA stability complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein Q

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Carlito syrichta Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tarsius_syrichta-2.0.1 Primary Assembly

Genomic

  1. NW_007260132.1 Reference Tarsius_syrichta-2.0.1 Primary Assembly

    Range
    771600..806029 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008073722.1 → XP_008071913.1  heterogeneous nuclear ribonucleoprotein Q isoform X6

    See identical proteins and their annotated locations for XP_008071913.1

    UniProtKB/TrEMBL
    A0A1U7UT24
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 553
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  2. XM_021706826.1 → XP_021562501.1  heterogeneous nuclear ribonucleoprotein Q isoform X7

    UniProtKB/TrEMBL
    A0A3Q0DI55
    Related
    ENSTSYP00000022075.1, ENSTSYT00000035653.1
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 522
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  3. XM_008073721.1 → XP_008071912.1  heterogeneous nuclear ribonucleoprotein Q isoform X5

    See identical proteins and their annotated locations for XP_008071912.1

    UniProtKB/TrEMBL
    A0A1U7V2I2
    Related
    ENSTSYP00000015094.1, ENSTSYT00000048472.1
    Conserved Domains (2) summary
    TIGR01648
    Location:103 → 557
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    cd21066
    Location:23 → 107
    NURR_hnRNPQ; NURR (N-terminal unit for RNA recognition) domain found in heterogeneous nuclear ribonucleoprotein Q (hnRNPQ) and similar proteins

  4. XM_021706825.1 → XP_021562500.1  heterogeneous nuclear ribonucleoprotein Q isoform X4

    UniProtKB/TrEMBL
    A0A3Q0DK62
    Conserved Domains (1) summary
    cl25617
    Location:103 → 577
    LSM_int_assoc; LSM-interacting associated unstructured

  5. XM_021706824.1 → XP_021562499.1  heterogeneous nuclear ribonucleoprotein Q isoform X3

    UniProtKB/TrEMBL
    A0A3Q0DE06
    Conserved Domains (1) summary
    cl25617
    Location:103 → 580
    LSM_int_assoc; LSM-interacting associated unstructured

  6. XM_008073720.1 → XP_008071911.1  heterogeneous nuclear ribonucleoprotein Q isoform X1

    UniProtKB/TrEMBL
    A0A1U7V130
    Related
    ENSTSYP00000012207.2, ENSTSYT00000013305.2
    Conserved Domains (4) summary
    cd12483
    Location:161 → 239
    RRM1_hnRNPQ; RNA recognition motif 1 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)
    cd12489
    Location:241 → 325
    RRM2_hnRNPQ; RNA recognition motif 2 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)
    cd12495
    Location:337 → 408
    RRM3_hnRNPQ; RNA recognition motif 3 in vertebrate heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)
    TIGR01648
    Location:103 → 615
    hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

  7. XM_021706823.1 → XP_021562498.1  heterogeneous nuclear ribonucleoprotein Q isoform X2

    UniProtKB/TrEMBL
    A0A3Q0DL50
    Conserved Domains (1) summary
    cl25617
    Location:103 → 618
    LSM_int_assoc; LSM-interacting associated unstructured
Nucleotide Protein
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