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ECM1 extracellular matrix protein 1 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103247194, updated on 11-Mar-2024

Summary

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Gene symbol
ECM1
Gene description
extracellular matrix protein 1
See related
Ensembl:ENSCSAG00000018071
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666038.1 (12777257..12783212, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 20 Unlocalized Scaffold NW_006735561.1 (1008640..1014595)

NW_023666038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119624296 Neighboring gene uncharacterized LOC103247195 Neighboring gene ADAMTS like 4 Neighboring gene threonyl-tRNA synthetase 2, mitochondrial Neighboring gene regulation of nuclear pre-mRNA domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of bone mineralization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
extracellular matrix protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666038.1 Reference Vero_WHO_p1.0

    Range
    12777257..12783212 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008019261.2 → XP_008017452.1  extracellular matrix protein 1 isoform X2

    Conserved Domains (1) summary
    pfam05782
    Location:6 → 415
    ECM1; Extracellular matrix protein 1 (ECM1)

  2. XM_008019260.2 → XP_008017451.1  extracellular matrix protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A0D9RZQ3
    Related
    ENSCSAP00000014092.1
    Conserved Domains (1) summary
    pfam05782
    Location:6 → 540
    ECM1; Extracellular matrix protein 1 (ECM1)
Nucleotide Protein
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