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PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 [ Chlorocebus sabaeus (green monkey) ]

Gene ID: 103225979, updated on 11-Mar-2024

Summary

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Gene symbol
PLOD1
Gene description
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Chlorocebus sabaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus
Orthologs
human mouse all
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Genomic context

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See PLOD1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
102 current Vero_WHO_p1.0 (GCF_015252025.1) Unplaced Scaffold NW_023666054.1 (23682782..23725813, complement)
100 previous assembly Chlorocebus_sabeus 1.1 (GCF_000409795.2) 20 NC_023661.1 (119824380..119865866, complement)

NW_023666054.1Genomic Context describing neighboring genes Neighboring gene inositol monophosphatase 1-like Neighboring gene mitofusin 2 Neighboring gene KIAA2013 ortholog Neighboring gene U5 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chlorocebus sabaeus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vero_WHO_p1.0

Genomic

  1. NW_023666054.1 Reference Vero_WHO_p1.0

    Range
    23682782..23725813 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_037985032.1 → XP_037840960.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X1

    Conserved Domains (1) summary
    smart00702
    Location:682 → 845
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_037985034.1 → XP_037840962.1  procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 isoform X2

    Conserved Domains (1) summary
    cl21496
    Location:682 → 789
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
Nucleotide Protein
Heading Accession and Version

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