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rnf34a ring finger protein 34a [ Callorhinchus milii (elephant shark) ]

Gene ID: 103184307, updated on 11-Mar-2024

Summary

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Gene symbol
rnf34a
Gene description
ring finger protein 34a
See related
Ensembl:ENSCMIG00000006625
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
rnf34
Orthologs
human zebrafish all
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Genomic context

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See rnf34a in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704749.1 (7577342..7586856)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890147.1 (804537..814054, complement)

NW_024704749.1Genomic Context describing neighboring genes Neighboring gene purinergic receptor P2X, ligand-gated ion channel, 4a Neighboring gene calcium/calmodulin-dependent protein kinase kinase 2 Neighboring gene anaphase promoting complex subunit 5 Neighboring gene lysine-specific demethylase 2B-like Neighboring gene lysine-specific demethylase 2B-like Neighboring gene E3 ubiquitin-protein ligase RNF34-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of extrinsic apoptotic signaling pathway via death domain receptors IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein K48-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF34a
Names
ring finger protein 34

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704749.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    7577342..7586856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007902234.2 → XP_007900425.1  E3 ubiquitin-protein ligase RNF34a isoform X2

    UniProtKB/TrEMBL
    A0A4W3HD84, A0A4W3HVL7
    Related
    ENSCMIP00000013117.1
    Conserved Domains (2) summary
    cd16706
    Location:291 → 329
    RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
    cl28890
    Location:52 → 98
    FYVE_like_SF; FYVE domain like superfamily

  2. XM_042337689.1 → XP_042193623.1  E3 ubiquitin-protein ligase RNF34a isoform X2

    UniProtKB/TrEMBL
    A0A4W3HD84, A0A4W3HVL7
    Conserved Domains (2) summary
    cd16706
    Location:291 → 329
    RING-HC_CARP1; RING finger, HC subclass, found in caspases-8 and -10-associated RING finger protein 1 (CARP1) and similar proteins
    cl28890
    Location:52 → 98
    FYVE_like_SF; FYVE domain like superfamily

  3. XM_007902233.2 → XP_007900424.1  E3 ubiquitin-protein ligase RNF34a isoform X1

    See identical proteins and their annotated locations for XP_007900424.1

    UniProtKB/TrEMBL
    A0A4W3HVL7, V9KYY0
    Conserved Domains (2) summary
    pfam13920
    Location:295 → 337
    zf-C3HC4_3; Zinc finger, C3HC4 type (RING finger)
    cl22851
    Location:59 → 105
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

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