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cubn cubilin (intrinsic factor-cobalamin receptor) [ Callorhinchus milii (elephant shark) ]

Gene ID: 103181573, updated on 11-Mar-2024

Summary

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Gene symbol
cubn
Gene description
cubilin (intrinsic factor-cobalamin receptor)
See related
Ensembl:ENSCMIG00000016862
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
67
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704743.1 (18217371..18375267, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890113.1 (4088588..4246715, complement)

NW_024704743.1Genomic Context describing neighboring genes Neighboring gene complement C1q-like protein 3 Neighboring gene Ras suppressor protein 1 Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene tRNA aspartic acid methyltransferase 1 Neighboring gene vimentin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: cubilin
Names
cubilin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704743.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    18217371..18375267 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042331818.1 → XP_042187752.1  LOW QUALITY PROTEIN: cubilin

    UniProtKB/TrEMBL
    A0A4W3K7X0
    Conserved Domains (3) summary
    smart00179
    Location:262 → 305
    EGF_CA; Calcium-binding EGF-like domain
    cd00041
    Location:1168 → 1279
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00054
    Location:435 → 471
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
Nucleotide Protein
Heading Accession and Version

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