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LOC103180301 RNA-binding protein 7 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103180301, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103180301
Gene description
RNA-binding protein 7
See related
Ensembl:ENSCMIG00000006363
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
rbm7
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Genomic context

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See LOC103180301 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704766.1 (2523365..2529375)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890097.1 (2561666..2565854)

NW_024704766.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103180297 Neighboring gene CXADR-like membrane protein Neighboring gene small fragment nuclease Neighboring gene immunoglobulin superfamily, member 9Bb Neighboring gene junctional adhesion molecule 3b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 7
Names
RNA binding motif protein 7
RNA-binding protein 7-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704766.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    2523365..2529375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042343949.1 → XP_042199883.1  RNA-binding protein 7 isoform X2

    Conserved Domains (2) summary
    smart00360
    Location:10 → 81
    RRM; RNA recognition motif
    COG0724
    Location:4 → 149
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

  2. XM_042343948.1 → XP_042199882.1  RNA-binding protein 7 isoform X1

    UniProtKB/TrEMBL
    A0A4W3HBL1, V9KGX6
    Conserved Domains (2) summary
    TIGR01628
    Location:11 → 231
    PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
    cd12592
    Location:8 → 82
    RRM_RBM7; RNA recognition motif (RRM) found in vertebrate RNA-binding protein 7 (RBM7)
Nucleotide Protein
Heading Accession and Version

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