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st8sia4 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103178400, updated on 12-Sep-2024

Summary

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Gene symbol
st8sia4
Gene description
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
See related
Ensembl:ENSCMIG00000017825
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
siat8D
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (107339840..107379678)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890080.1 (4835254..4873902, complement)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene solute carrier organic anion transporter family member 4C1-like Neighboring gene solute carrier organic anion transporter family member 3A1-like Neighboring gene membrane protein FAM174A Neighboring gene chromodomain helicase DNA binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary history of the alpha2,8-sialyltransferase (ST8Sia) gene family: tandem duplications in early deuterostomes explain most of the diversity found in the vertebrate ST8Sia genes. Harduin-Lepers A, et al. BMC Evol Biol, 2008 Sep 23. PMID 18811928, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase
Names
putative alpha2,8-sialyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    107339840..107379678
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007893115.2 → XP_007891306.1  CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A4W3KCA1, A9J649
    Related
    ENSCMIP00000042900.1
    Conserved Domains (1) summary
    pfam00777
    Location:92 → 351
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_007893116.2 → XP_007891307.1  CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform X3

    Conserved Domains (1) summary
    pfam00777
    Location:92 → 260
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_042334130.1 → XP_042190064.1  CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A9J649

  4. XM_042334135.1 → XP_042190069.1  CMP-N-acetylneuraminate-poly-alpha-2,8-sialyltransferase isoform X2

    UniProtKB/TrEMBL
    A9J649
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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