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Zkscan5 zinc finger with KRAB and SCAN domains 5 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 103160362, updated on 11-Mar-2024

Summary

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Gene symbol
Zkscan5
Gene description
zinc finger with KRAB and SCAN domains 5
Locus tag
I79_017882
See related
Ensembl:ENSCGRG00015016094
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Zkscan5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614752.1 (302436..320383, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (81586968..81604924)

NW_003614752.1Genomic Context describing neighboring genes Neighboring gene zinc finger and SCAN domain containing 25 Neighboring gene zinc finger protein 655 Neighboring gene zinc finger protein 394 Neighboring gene ATP synthase membrane subunit f

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein with KRAB and SCAN domains 5
Names
Zinc finger protein with KRAB and SCAN domains 5
zinc finger protein with KRAB and SCAN domain 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614752.1 Reference CriGri_1.0 Primary Assembly

    Range
    302436..320383 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007650315.4 → XP_007648505.1  zinc finger protein with KRAB and SCAN domains 5 isoform X3

    See identical proteins and their annotated locations for XP_007648505.1

    UniProtKB/TrEMBL
    A0A8C2QN04
    Conserved Domains (6) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    COG5048
    Location:250 → 674
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:469 → 489
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:467 → 489
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:48 → 135
    SCAN; SCAN domain
    pfam13465
    Location:311 → 334
    zf-H2C2_2; Zinc-finger double domain

  2. XM_016979342.3 → XP_016834831.1  zinc finger protein with KRAB and SCAN domains 5 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JLL5
    Conserved Domains (7) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    COG5048
    Location:322 → 746
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:541 → 561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:539 → 561
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:220 → 255
    KRAB; KRAB box
    pfam02023
    Location:48 → 135
    SCAN; SCAN domain
    pfam13465
    Location:777 → 801
    zf-H2C2_2; Zinc-finger double domain

  3. XM_007650314.4 → XP_007648504.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    See identical proteins and their annotated locations for XP_007648504.1

    UniProtKB/TrEMBL
    A0A061IC59
    Conserved Domains (7) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    COG5048
    Location:323 → 747
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:542 → 562
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:540 → 562
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:221 → 256
    KRAB; KRAB box
    pfam02023
    Location:48 → 135
    SCAN; SCAN domain
    pfam13465
    Location:778 → 802
    zf-H2C2_2; Zinc-finger double domain

  4. XM_035460621.1 → XP_035316512.1  zinc finger protein with KRAB and SCAN domains 5 isoform X5

    UniProtKB/TrEMBL
    A0A9J7GUF7
    Conserved Domains (4) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    sd00017
    Location:271 → 291
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:269 → 291
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:283 → 308
    zf-H2C2_2; Zinc-finger double domain

  5. XM_035460620.1 → XP_035316511.1  zinc finger protein with KRAB and SCAN domains 5 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GV62
    Conserved Domains (5) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    cd07765
    Location:221 → 255
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    sd00017
    Location:344 → 364
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:356 → 381
    zf-H2C2_2; Zinc-finger double domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    81586968..81604924
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035443163.1 → XP_035299054.1  zinc finger protein with KRAB and SCAN domains 5 isoform X5

    UniProtKB/TrEMBL
    A0A9J7GUF7
    Conserved Domains (4) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    sd00017
    Location:271 → 291
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:269 → 291
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:283 → 308
    zf-H2C2_2; Zinc-finger double domain

  2. XM_035443162.1 → XP_035299053.1  zinc finger protein with KRAB and SCAN domains 5 isoform X4

    UniProtKB/TrEMBL
    A0A9J7GV62
    Conserved Domains (5) summary
    smart00431
    Location:47 → 156
    SCAN; leucine rich region
    cd07765
    Location:221 → 255
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
    sd00017
    Location:344 → 364
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:356 → 381
    zf-H2C2_2; Zinc-finger double domain

  3. XM_027413631.2 → XP_027269432.1  zinc finger protein with KRAB and SCAN domains 5 isoform X1

    UniProtKB/TrEMBL
    A0A061IC59
    Related
    ENSCGRP00015021120.1, ENSCGRT00015025951.2

  4. XM_027413632.2 → XP_027269433.1  zinc finger protein with KRAB and SCAN domains 5 isoform X2

    UniProtKB/TrEMBL
    A0A9J7JLL5

  5. XM_027413633.2 → XP_027269434.1  zinc finger protein with KRAB and SCAN domains 5 isoform X3

    UniProtKB/TrEMBL
    A0A8C2QN04
    Related
    ENSCGRP00015021123.1, ENSCGRT00015025954.2
Nucleotide Protein Strain
Heading Accession and Version

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