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SHH sonic hedgehog signaling molecule [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103125507, updated on 6-Jun-2024

Summary

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Gene symbol
SHH
Gene description
sonic hedgehog signaling molecule
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 8 NC_080169.1 (124437836..124444872)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804836.1 (87965..93800)

Chromosome 8 - NC_080169.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132539816 Neighboring gene dipeptidyl aminopeptidase-like protein 6 Neighboring gene uncharacterized LOC132539817 Neighboring gene uncharacterized LOC132539963 Neighboring gene RNA binding motif protein 33

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables patched binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intein-mediated protein splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligodendrocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoprocessing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sonic hedgehog protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080169.1 Reference mEriEur2.1

    Range
    124437836..124444872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060196851.1 → XP_060052834.1  sonic hedgehog protein

    UniProtKB/TrEMBL
    A0A1S3AK22
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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