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ATP2B4 ATPase plasma membrane Ca2+ transporting 4 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103112649, updated on 6-Jun-2024

Summary

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Gene symbol
ATP2B4
Gene description
ATPase plasma membrane Ca2+ transporting 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 19 NC_080180.1 (22224270..22334205)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804090.1 (3601725..3670884)

Chromosome 19 - NC_080180.1Genomic Context describing neighboring genes Neighboring gene proline and arginine rich end leucine rich repeat protein Neighboring gene opticin Neighboring gene uncharacterized LOC132534610 Neighboring gene lymphocyte transmembrane adaptor 1 Neighboring gene zinc finger BED-type containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type calcium transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables PDZ domain binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytosolic calcium ion concentration IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plasma membrane calcium-transporting ATPase 4
Names
ATPase, Ca++ transporting, plasma membrane 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080180.1 Reference mEriEur2.1

    Range
    22224270..22334205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060178623.1 → XP_060034606.1  plasma membrane calcium-transporting ATPase 4 isoform X1

    UniProtKB/TrEMBL
    A0A1S3W9R9

  2. XM_007522117.3 → XP_007522179.2  plasma membrane calcium-transporting ATPase 4 isoform X3

    UniProtKB/TrEMBL
    A0A1S2ZNP2, A0A1S3W9R9
    Conserved Domains (7) summary
    TIGR01517
    Location:25 → 1052
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:153 → 454
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:868 → 1049
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:47 → 116
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12424
    Location:1089 → 1136
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam12710
    Location:655 → 794
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:515 → 604
    Cation_ATPase; Cation transport ATPase (P-type)

  3. XM_060178624.1 → XP_060034607.1  plasma membrane calcium-transporting ATPase 4 isoform X2

    UniProtKB/TrEMBL
    A0A1S3W9R9

  4. XM_007522118.3 → XP_007522180.2  plasma membrane calcium-transporting ATPase 4 isoform X4

    UniProtKB/TrEMBL
    A0A1S2ZNP4, A0A1S3W9R9
    Conserved Domains (7) summary
    TIGR01517
    Location:25 → 1040
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:153 → 442
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:856 → 1037
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:47 → 116
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12424
    Location:1077 → 1124
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam12710
    Location:643 → 782
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:503 → 592
    Cation_ATPase; Cation transport ATPase (P-type)

  5. XM_007522120.3 → XP_007522182.2  plasma membrane calcium-transporting ATPase 4 isoform X5

    UniProtKB/TrEMBL
    A0A1S2ZNN5, A0A1S3W9R9
    Conserved Domains (7) summary
    TIGR01517
    Location:25 → 1052
    ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
    pfam00122
    Location:153 → 454
    E1-E2_ATPase; E1-E2 ATPase
    pfam00689
    Location:868 → 1049
    Cation_ATPase_C; Cation transporting ATPase, C-terminus
    pfam00690
    Location:47 → 116
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    pfam12424
    Location:1089 → 1114
    ATP_Ca_trans_C; Plasma membrane calcium transporter ATPase C terminal
    pfam12710
    Location:655 → 794
    HAD; haloacid dehalogenase-like hydrolase
    pfam13246
    Location:515 → 604
    Cation_ATPase; Cation transport ATPase (P-type)

  6. XM_060178625.1 → XP_060034608.1  plasma membrane calcium-transporting ATPase 4 isoform X6

    UniProtKB/TrEMBL
    A0A1S3W9R9

  7. XM_060178626.1 → XP_060034609.1  plasma membrane calcium-transporting ATPase 4 isoform X7

Nucleotide Protein
Heading Accession and Version

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