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PTPRK protein tyrosine phosphatase receptor type K [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103086937, updated on 11-Mar-2024

Summary

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Gene symbol
PTPRK
Gene description
protein tyrosine phosphatase receptor type K
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
33
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006788159.1 (223097..796114, complement)

NW_006788159.1Genomic Context describing neighboring genes Neighboring gene thymocyte selection associated Neighboring gene ADP-ribosylation factor-related protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006788159 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase kappa

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006788159.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    223097..796114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007461250.1 → XP_007461312.1  receptor-type tyrosine-protein phosphatase kappa

    UniProtKB/TrEMBL
    A0A340XMF1
    Conserved Domains (9) summary
    cd06263
    Location:35 → 191
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00137
    Location:31 → 191
    MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
    smart00194
    Location:886 → 1146
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00410
    Location:201 → 287
    IG_like; Immunoglobulin like
    cd00047
    Location:913 → 1146
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00063
    Location:487 → 588
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:293 → 371
    fn3; Fibronectin type III domain
    pfam00102
    Location:1206 → 1440
    Y_phosphatase; Protein-tyrosine phosphatase
    cl11960
    Location:203 → 283
    Ig; Immunoglobulin domain

  2. XM_007461251.1 → XP_007461313.1  receptor-type tyrosine-protein phosphatase kappa

    UniProtKB/TrEMBL
    A0A340XIR3
    Conserved Domains (9) summary
    cd06263
    Location:35 → 191
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00137
    Location:31 → 191
    MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
    smart00194
    Location:886 → 1140
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00410
    Location:201 → 287
    IG_like; Immunoglobulin like
    cd00047
    Location:913 → 1140
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00063
    Location:487 → 588
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:293 → 371
    fn3; Fibronectin type III domain
    pfam00102
    Location:1200 → 1434
    Y_phosphatase; Protein-tyrosine phosphatase
    cl11960
    Location:203 → 283
    Ig; Immunoglobulin domain

  3. XM_007461249.1 → XP_007461311.1  receptor-type tyrosine-protein phosphatase kappa

    UniProtKB/TrEMBL
    A0A340XIS1
    Conserved Domains (9) summary
    cd06263
    Location:35 → 191
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00137
    Location:31 → 191
    MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
    smart00194
    Location:902 → 1162
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00410
    Location:201 → 287
    IG_like; Immunoglobulin like
    cd00047
    Location:929 → 1162
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00063
    Location:491 → 588
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:293 → 371
    fn3; Fibronectin type III domain
    pfam00102
    Location:1222 → 1456
    Y_phosphatase; Protein-tyrosine phosphatase
    cl11960
    Location:203 → 283
    Ig; Immunoglobulin domain

  4. XM_007461252.1 → XP_007461314.1  receptor-type tyrosine-protein phosphatase kappa

    UniProtKB/TrEMBL
    A0A340XPR0
    Conserved Domains (9) summary
    cd06263
    Location:35 → 191
    MAM; Meprin, A5 protein, and protein tyrosine phosphatase Mu (MAM) domain. MAM is an extracellular domain which mediates protein-protein interactions and is found in a diverse set of proteins, many of which are known to function in cell adhesion. Members ...
    smart00137
    Location:31 → 191
    MAM; Domain in meprin, A5, receptor protein tyrosine phosphatase mu (and others)
    smart00194
    Location:885 → 1139
    PTPc; Protein tyrosine phosphatase, catalytic domain
    smart00410
    Location:201 → 287
    IG_like; Immunoglobulin like
    cd00047
    Location:912 → 1139
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
    cd00063
    Location:487 → 588
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam00041
    Location:293 → 371
    fn3; Fibronectin type III domain
    pfam00102
    Location:1199 → 1433
    Y_phosphatase; Protein-tyrosine phosphatase
    cl11960
    Location:203 → 283
    Ig; Immunoglobulin domain
Nucleotide Protein
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