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ABCB9 ATP binding cassette subfamily B member 9 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103082637, updated on 11-Mar-2024

Summary

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Gene symbol
ABCB9
Gene description
ATP binding cassette subfamily B member 9
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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See ABCB9 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006774065.1 (2085781..2105941)

NW_006774065.1Genomic Context describing neighboring genes Neighboring gene ARF like GTPase 6 interacting protein 4 Neighboring gene 2-oxoglutarate and iron dependent oxygenase domain containing 2 Neighboring gene VPS37B subunit of ESCRT-I Neighboring gene huntingtin interacting protein 1 related

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006774065 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ABC-type oligopeptide transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptide transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-binding cassette sub-family B member 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006774065.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    2085781..2105941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007448683.1 → XP_007448745.1  ATP-binding cassette sub-family B member 9

    UniProtKB/TrEMBL
    A0A340WP31
    Conserved Domains (4) summary
    cd03248
    Location:493 → 718
    ABCC_TAP; ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C
    TIGR00958
    Location:44 → 738
    3a01208; Conjugate Transporter-2 (CT2) Family protein
    pfam00664
    Location:194 → 455
    ABC_membrane; ABC transporter transmembrane region
    cl00395
    Location:141 → 213
    FMT_core; Formyltransferase, catalytic core domain

  2. XM_007448684.1 → XP_007448746.1  ATP-binding cassette sub-family B member 9

    UniProtKB/TrEMBL
    A0A340WJ51
    Conserved Domains (4) summary
    cd03248
    Location:450 → 675
    ABCC_TAP; ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C
    TIGR00958
    Location:44 → 695
    3a01208; Conjugate Transporter-2 (CT2) Family protein
    pfam00664
    Location:194 → 410
    ABC_membrane; ABC transporter transmembrane region
    cl00395
    Location:141 → 213
    FMT_core; Formyltransferase, catalytic core domain
Nucleotide Protein
Heading Accession and Version

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