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HCFC2 host cell factor C2 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103082401, updated on 11-Mar-2024

Summary

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Gene symbol
HCFC2
Gene description
host cell factor C2
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006780910.1 (1582586..1628917)

NW_006780910.1Genomic Context describing neighboring genes Neighboring gene thymine DNA glycosylase Neighboring gene glycosyltransferase 8 domain containing 2 Neighboring gene nuclear transcription factor Y subunit beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006780910 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006780910.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    1582586..1628917
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007454279.1 → XP_007454341.1  host cell factor 2

    UniProtKB/TrEMBL
    A0A340WZ56
    Conserved Domains (5) summary
    cd00063
    Location:641 → 672
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:190 → 241
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:22 → 59
    Kelch_1; Kelch motif
    pfam13415
    Location:207 → 253
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:312 → 354
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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