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clec16a C-type lectin domain containing 16A [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103042374, updated on 6-Jun-2024

Summary

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Gene symbol
clec16a
Gene description
C-type lectin domain containing 16A
See related
EnsemblRapid:ENSAMXG00025026803
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
24
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 19 NC_064426.1 (4448617..4544006, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 2 NC_035898.1 (29761978..29864484)

Chromosome 19 - NC_064426.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q Neighboring gene suppressor of cytokine signaling 1a Neighboring gene Dexi homolog (mouse) Neighboring gene class II, major histocompatibility complex, transactivator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosome to lysosome transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of autophagosome maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endolysosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in late endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein CLEC16A
Names
C-type lectin domain family 16 member A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064426.1 Reference AstMex3_surface

    Range
    4448617..4544006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049467792.1 → XP_049323749.1  protein CLEC16A isoform X2

    UniProtKB/TrEMBL
    A0A8T2KYE2

  2. XM_049467793.1 → XP_049323750.1  protein CLEC16A isoform X3

    UniProtKB/TrEMBL
    A0A8T2KYE2
    Related
    ENSAMXP00025043778.1, ENSAMXT00025056025.1

  3. XM_049467794.1 → XP_049323751.1  protein CLEC16A isoform X4

    UniProtKB/TrEMBL
    A0A8T2KYE2

  4. XM_049467791.1 → XP_049323748.1  protein CLEC16A isoform X1

    UniProtKB/TrEMBL
    A0A8T2KYE2
    Related
    ENSAMXP00025043801.1, ENSAMXT00025056060.1

  5. XM_049467795.1 → XP_049323752.1  protein CLEC16A isoform X5

    UniProtKB/TrEMBL
    W5K4X3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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