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exosc7 exosome component 7 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103021693, updated on 6-Jun-2024

Summary

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Gene symbol
exosc7
Gene description
exosome component 7
See related
EnsemblRapid:ENSAMXG00025000709
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 3 NC_064410.1 (65175624..65183709, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019171540.1 (156894..165218, complement)

Chromosome 3 - NC_064410.1Genomic Context describing neighboring genes Neighboring gene CUB domain containing protein 1b Neighboring gene C-type lectin domain family 3, member Bb Neighboring gene HGH1 homolog (S. cerevisiae) Neighboring gene BOP1 ribosomal biogenesis factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U1 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U5 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear mRNA surveillance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exosome complex component RRP42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064410.1 Reference AstMex3_surface

    Range
    65175624..65183709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049475670.1 → XP_049331627.1  exosome complex component RRP42 isoform X1

    UniProtKB/TrEMBL
    A0A3B1J5J7

  2. XM_049475671.1 → XP_049331628.1  exosome complex component RRP42 isoform X2

    UniProtKB/TrEMBL
    A0A3B1J5J7, A0A8T2MAD6
    Related
    ENSAMXP00025001611.1, ENSAMXT00025001739.1
Nucleotide Protein
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